The argument seems to be A) it doesn't accomplish anything B) It simply isn't doing enough or C) There's no God to hear your prayers anyway.
I'm not sure where the notion that just because someone offers comfort to another in their thoughts and prayers, it means they aren't doing other things—like donating money, volunteering, taking action, protesting—at the same time.
The two actions are not mutually exclusive.
What I think happens is Republican politicians who control the government right now (hopefully not much longer) make a giant photo op out of sending thoughts and prayers, then having a moment of silence, then going back to business as usual destroying Obama's legacy and lining their pockets. They cheapen the currency of concern and compassion.
Here's the thing: I can't tell you how many times, and there have been many, when friends who are quite vocal about their atheism and skepticism haven't hesitated a nanosecond to ask me to pray or keep a good thought for their sick child or parent.
That they get a job they're up for.
They can find the right words to say to a loved one.
They can make rent.
That the dog comes home.
That the diagnosis is negative.
And when they ask, each and every time, I'm more than happy to do it.
I believe in the power of prayer, and the comfort and peace it can bring people just knowing they're being thought of and loved. I've experienced it in my own life, for example when my parents died and a close friend was dying of AIDS.
In a world that's more and more demanding and uncertain, thoughts and prayers—along with other things—is an easy, meaningful offering I can give to comfort friends or strangers who need it. I don't see the downside.
By the way, I'm fine if you don't believe it, or think I'm foolish for doing it. To each their own. I'm just not sure where the venom and vitriol come from (unless it's the asshat Republican politician posers causing it—see above).
At any rate, I think there are more important things to rage against than me offering or someone taking comfort in the fact I'm thinking about them, hoping for the best and wishing them well along with anything else I may be doing to help their cause.
But if you happen to be one of those who gets angry just seeing the title of this post, you know what I'll be doing to wish you peace and calm.